Closed tseemann closed 8 years ago
I was wondering if the first sequence in the alignment is considered "special" in some (undocumented) way?
I see the code does something unusual:
// First sequence is the reference sequence so skip it // If there is an indel in the reference sequence, replace with the first proper base you find
I was wondering if the first sequence in the alignment is considered "special" in some (undocumented) way?
I see the code does something unusual: