496468: Allow '?' in fasta input

sanger-pathogens / snp-sites

Finds SNP sites from a multi-FASTA alignment file

http://sanger-pathogens.github.io/snp-sites/

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Closed bewt85 closed 8 years ago

bewt85 commented 8 years ago

Treats '?' in a fasta the same as a '-' or 'N'

I've double checked with some fake data and this appears to have had no effect on the runtime of snp_sites.

bewt85 commented 8 years ago

Partially addresses #28