Closed satta closed 8 years ago
The test suite for 2.2.2 fails with a bunch of tests on various platforms, e.g. i386. Here's the message:
FAIL: run-all-tests ========================================= snp-sites 2.2.2: src/test-suite.log ========================================= # TOTAL: 1 # PASS: 0 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 FAIL: run-all-tests =================== Running suite(s): Creating_SNP_Sites Alignment ../tests/data/uneven_alignment.aln contains sequences of unequal length. Expected length is 8 but got 9 in sequence Uneven_number_of_bases 76%: Checks: 21, Failures: 5, Errors: 0 ../tests/check-snp-sites.c:40:F:snp_sites:valid_alignment_with_one_line_per_sequence:0: Invalid VCF file for 1 line per seq ../tests/check-snp-sites.c:79:F:snp_sites:valid_alignment_with_multiple_lines_per_sequence:0: Invalid VCF file for multiple lines per seq ../tests/check-snp-sites.c:67:F:snp_sites:valid_alignment_with_one_line_per_sequence_gzipped:0: Invalid VCF file for 1 line per seq ../tests/check-snp-sites.c:53:F:snp_sites:valid_alignment_with_n_as_gap:0: Invalid VCF file for 1 line per seq ../tests/check-snp-sites.c:132:F:snp_sites:valid_with_all_outputted_with_custom_name:0: Custom name needs extra extension for VCF Running suite(s): Creating_VCF_file 100%: Checks: 3, Failures: 0, Errors: 0 FAIL run-all-tests (exit status: 1) ============================================================================ Testsuite summary for snp-sites 2.2.2 ============================================================================ # TOTAL: 1 # PASS: 0 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See src/test-suite.log ============================================================================
A full log is at https://buildd.debian.org/status/fetch.php?pkg=snp-sites&arch=i386&ver=2.2.2-1&stamp=1458222828 for example.
I can reproduce this on a Jessie i386 Vagrant box. A quick bisect flagged commit b2efeb4288d4201480408b7dfe3e314c243e53c6 as the first bad one, but I'm not familiar enough with what is being tested to say more.
b2efeb4288d4201480408b7dfe3e314c243e53c6
Hopefully it should be fixed in 2.3.0
Nice, thanks! Waiting for the tag, then I'll update the build.
Builds are fixed now, many thanks!
The test suite for 2.2.2 fails with a bunch of tests on various platforms, e.g. i386. Here's the message:
A full log is at https://buildd.debian.org/status/fetch.php?pkg=snp-sites&arch=i386&ver=2.2.2-1&stamp=1458222828 for example.
I can reproduce this on a Jessie i386 Vagrant box. A quick bisect flagged commit
b2efeb4288d4201480408b7dfe3e314c243e53c6
as the first bad one, but I'm not familiar enough with what is being tested to say more.