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sanger-pathogens / snp-sites

Finds SNP sites from a multi-FASTA alignment file
http://sanger-pathogens.github.io/snp-sites/
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Linuxbrew installation issue (links issue) #54

Closed rbutleriii closed 8 years ago

rbutleriii commented 8 years ago

[rbutler@genomics 85]$ brew install snp-sites ==> Installing snp-sites from homebrew/science ==> Installing dependencies for homebrew/science/snp-sites: patchelf ==> Installing homebrew/science/snp-sites dependency: patchelf ==> Downloading https://linuxbrew.bintray.com/bottles/patchelf-0.9_1.x86_64_linux.bottle.tar.gz

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==> Pouring patchelf-0.9_1.x86_64_linux.bottle.tar.gz /home/rbutler/.linuxbrew/Cellar/patchelf/0.9_1: 6 files, 1.2M ==> Installing homebrew/science/snp-sites ==> Downloading https://linuxbrew.bintray.com/bottles-science/snp-sites-2.2.0.x86_64_linux.bottle.tar.gz

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==> Pouring snp-sites-2.2.0.x86_64_linux.bottle.tar.gz Error: An unexpected error occurred during the brew link step The formula built, but is not symlinked into /home/rbutler/.linuxbrew No such file or directory @ realpath_rec - /home/linuxbrew Error: No such file or directory @ realpath_rec - /home/linuxbrew [rbutler@genomics 85]$ brew update Already up-to-date. [rbutler@genomics 85]$ brew tap homebrew/science [rbutler@genomics 85]$ brew install snp-sites Warning: homebrew/science/snp-sites-2.2.0 already installed, it's just not linked

andrewjpage commented 8 years ago

This seems to be an issue with homebrew, so they might be best placed to help you with this.