Closed mgalardini closed 7 years ago
Hi Marco, Yes this is expected behaviour. Gaps will only be outputted if there is a SNP in another genome. If you want to modify the code and submit a pull request with the functionality you need, I would be happy to include it. Andrew
Hi Andrew, my C is not nearly as good as required, but I'll try my best. Thanks for your prompt reply. Marco
Hi,
thanks for this very fast and elegant tool. I was wondering whether there is any option to also consider gaps. I am using this alignment, which has a region with gaps in a single sequence. I ran the following command:
The output is only including the snps and not the gaps. I imagine this is due to the fact that the region with gaps doesn't have any SNPs?
Is this an expected behaviour? Best, Marco