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sanger-pathogens / snp-sites

Finds SNP sites from a multi-FASTA alignment file
http://sanger-pathogens.github.io/snp-sites/
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Print to screen #63

Closed robynslee closed 6 years ago

robynslee commented 6 years ago

Hi there, Just a suggestion - an output file seems to be required to run commands, but it might be nice if we could just print to screen if we just want to have a quick look at the data. Thanks!

tseemann commented 6 years ago

This is a good idea. If -o not specifed, use stdout.

@rsleeepi you might be able to emulate this now using snp-sites -o /dev/stdout

andrewjpage commented 6 years ago

The default is now to print to STDOUT https://github.com/sanger-pathogens/snp-sites/releases/tag/v2.4.0