search

sanger-pathogens / snp-sites

Finds SNP sites from a multi-FASTA alignment file
http://sanger-pathogens.github.io/snp-sites/
Other
232 stars 50 forks source link

Segmentation error #78

Closed besnarda closed 4 years ago

besnarda commented 5 years ago

I am using snp-sites version 2.4.1, it is used in the snippy pipeline to detect snp in a full alignement. Error message from this pipeline is:

snp-sites: symbol lookup error: snp-sites: undefined symbol: generate_snp_sites_with_ref_pure_mono ERROR: Could not run: snp-sites -c -o 2_strains.aln 2_strains.full.aln

I have tried to launch again with only two strains and got a segmentation error

snp-sites 2_strains.full.aln

Any ideas?

2_strains.full.aln.zip

andrewjpage commented 4 years ago

This is an error with your installation. I would recommend reinstalling it.