Rewrite how count_constant_sites is implemented, add test

sanger-pathogens / snp-sites

Finds SNP sites from a multi-FASTA alignment file

http://sanger-pathogens.github.io/snp-sites/

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Closed pvanheus closed 5 years ago

pvanheus commented 5 years ago

This cleans up (I hope) and rewrites how the constant site counting is implemented. It moves some functions around and adds a test to the test suite.