Open sheinasim opened 2 years ago
Hi @sheinasim
I'm not a developer for pretextview, but if you have bam files of your reads mapped to the genome then you only need to pipe .sam format into PretextMap to generate a .pretext file to look at in pretextmap. Here's an example.
Hello!
I'm using the Yahs pipeline and creating a sorted scaffold .hic and .assembly file that shows the contig boundaries in Juicebox.
Is it possible to convert my .hic and .assembly file to a pretext file?
I can create a pretext file with the final scaffolds and their contacts, but it doesn't show the contig boundaries.
Best wishes, Sheina