I don't have a bam alignment but instead have a pairs file. However, whenever I convert it and try to load it, I get a segmentation fault. I tried using a sample pairs file from https://github.com/4dn-dcic/pairix/blob/master/samples/4dn.bsorted.chr21_22_only.largechr.pairs with the command: cat 4dn.bsorted.chr21_22_only.largechr.pairs | Pretext/PretextMap -o mapped.pretext with PretextMap Version 0.0.41 and still get a segmentation fault when loading this file:
I can load VGP pretaxt files w/o issue so I think my installation is working correctly. I assume I'm doing something simple incorrectly and would appreciate any advice.
I don't have a bam alignment but instead have a pairs file. However, whenever I convert it and try to load it, I get a segmentation fault. I tried using a sample pairs file from https://github.com/4dn-dcic/pairix/blob/master/samples/4dn.bsorted.chr21_22_only.largechr.pairs with the command:
cat 4dn.bsorted.chr21_22_only.largechr.pairs | Pretext/PretextMap -o mapped.pretextwithPretextMap Version 0.0.41and still get a segmentation fault when loading this file:I can load VGP pretaxt files w/o issue so I think my installation is working correctly. I assume I'm doing something simple incorrectly and would appreciate any advice.