search

sanger-tol / ascc

A Nextflow DSL2 pipeline for the identification of cobiont and contaminating sequences using fasta and pacbio data.
https://pipelines.tol.sanger.ac.uk/ascc
MIT License
3 stars 0 forks source link

bedTools.py refactoring #30

Closed yumisims closed 4 months ago

yumisims commented 9 months ago

Description of the bug

bedtools is being called from a local directory, better to replace with pybedtools package.

I am working on this issue.

Command used and terminal output

No response

Relevant files

bedTools.py

System information

No response

DLBPointon commented 4 months ago

Already done