[EXTENSION] Add in the current post-ASCC scripts as a flagged option

sanger-tol / ascc

A Nextflow DSL2 pipeline for the identification of cobiont and contaminating sequences using fasta and pacbio data.

https://pipelines.tol.sanger.ac.uk/ascc

MIT License

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[EXTENSION] Add in the current post-ASCC scripts as a flagged option #46

Open DLBPointon opened 3 months ago

DLBPointon commented 3 months ago

Description of feature

There are a couple of scripts which are run, post ASCC to clean the genome files based on the output of the ASCC run. These should be rolled into the new pipeline and accessed via a --SANGER true flag.