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sanger-tol / ascc

A Nextflow DSL2 pipeline for the identification of cobiont and contaminating sequences using fasta and pacbio data.
https://pipelines.tol.sanger.ac.uk/ascc
MIT License
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v1.2.0 - CobiontID #8

Open DLBPointon opened 12 months ago

DLBPointon commented 11 months ago

For now, we should use the markerscan signularity.

Although another project in the future could be the conversion of MarkerScan into Nextflow to improve efficiency.

DLBPointon commented 4 months ago

MarkerScan is being run separately and we are moving towards a successor kit. This should be either moved to a second release or cancelled for now