Count busco genes

[zb32]

count_busco_genes module

Created a module for count_busco_genes and a new subworkflow called collate_stats where the module is called. Both unit and full local tests are working.

PR checklist

• [x] This comment contains a description of changes (with reason).
• [x] If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/blobtoolkit branch on the nf-core/test-datasets repository.
• [x] Make sure your code lints (nf-core lint).
• [x] Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
• [x] Output Documentation in docs/output.md is updated.
• [x] README.md is updated (including new tool citations and authors/contributors).

[zb32]

Try to get PythonBlack, Prettier and EditorConfig working. Also comment if both unit and full local tests are working.

I've got EditorConfig working now. PythonBlack is working locally but still failing the tests on Github. When I run Prettier on the parameters.md file it makes the file harder to read with some text in the table being cut off onto new rows.

[muffato]

I saw a comment about black failing on the nf-core Slack. It's because GitHub checks use the latest stable version of black, which was just updated a couple of weeks ago. Apparently, it's black's policy that they update their stable version once a year, in January. I'll get black updated on the farm, so that we can use it effectively

[zb32]

Try to get PythonBlack, Prettier and EditorConfig working. Also comment if both unit and full local tests are working.

I've now ran both the test and test_full profiles and both work