Closed alxndrdiaz closed 6 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 751c07c
+| ✅ 129 tests passed |+
#| ❔ 18 tests were ignored |#
!| ❗ 4 tests had warnings |!
Small test works: nextflow run . -profile test,docker --outdir <OUTDIR>
, and files to run the full test were also added
When I run the test
profile, I get the following warning.
WARN: Found unexpected parameters:
* --uniprot_blastx: /lustre/scratch123/tol/teams/tolit/users/ps22/pipelines/blobtoolkit/assets/test/mCerEla1.1.buscoregions.dmnd
- Ignore this warning: params.schema_ignore_params = "uniprot_blastx"
I think modifying the schema and config should fix it.
When I run the
test
profile, I get the following warning.WARN: Found unexpected parameters: * --uniprot_blastx: /lustre/scratch123/tol/teams/tolit/users/ps22/pipelines/blobtoolkit/assets/test/mCerEla1.1.buscoregions.dmnd - Ignore this warning: params.schema_ignore_params = "uniprot_blastx"
I think modifying the schema and config should fix it.
Done, the warning should not appear anymore.
Almost there, just a few small changes.
@priyanka-surana Just want to confirm if this can be merged, the requested change should be resolved in this commit: 8f3f719. If there are no other changes it can be merged.
Closing and opening a fresh PR. Give a couple days.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).