Open SamCT opened 1 month ago
Hi @SamCT
Apologies for the lack of reply, I haven't been getting any notifications from this repo.
We have seen this a few times, we think this is where the pipeline tries to download many containers at the same time and messes up 1 or 2 of them.
In this case, I would suggest cleaning out your singularity cache and then running this first:
nf-core download sanger-tol/curationpretext --revision 1.0.0 --compress none -d --force --outdir sanger-curationpretext --container-cache-utilisation amend --container-system singularity
This runs the download and translation of containers as a separate step. You should then be able to run the pipeline and be fine.
Again, apologies for not getting back to you sooner.
Description of the bug
Hello,
Following the instructions: https://pipelines.tol.sanger.ac.uk/curationpretext/1.0.0/usage , I am getting a FileNotFound error in the most recent version of this pipeline. I successfully installed and ran tests on the sanger-tol/treeval pipeline but am keen to get this running for standardizing curation in our lab.
Thanks, Sam
Command used and terminal output
nextflow run . -profile test,singularity
Relevant files
No response
System information
No response