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sanger-tol / curationpretext

A Nextflow DSL2 pipeline for pretext generation in curation
https://pipelines.tol.sanger.ac.uk/curationpretext
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Mapped Bam as input #34

Closed DLBPointon closed 2 months ago

DLBPointon commented 2 months ago

Description of feature

As a sub-pipeline of sanger-tol/ear it would be beneficial if it could take a mapped bam as input, this will stop the ear needing to map a bam twice.