Adding linting fixes - Githubissues

sanger-tol / curationpretext

A Nextflow DSL2 pipeline for pretext generation in curation

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Closed DLBPointon closed 1 year ago

DLBPointon commented 1 year ago

[X] This comment contains a description of changes (with reason).
[X] Make sure your code lints (nf-core lint).
[ ] Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
[ ] Usage Documentation in docs/usage.md is updated.
[ ] Output Documentation in docs/output.md is updated.
[ ] CHANGELOG.md is updated.
[ ] README.md is updated (including new tool citations and authors/contributors).

DLBPointon commented 1 year ago

~Linting is failing due to using nf-core 2.9, which we have not updated to as of yet due to bugs.~

~CI also has not been completed, but I can confirm this works and generated the expected output.~

Fixed CI to 2.8.0