sanger-tol / genomenote

This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.
https://pipelines.tol.sanger.ac.uk/genomenote
MIT License
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Agree on which Busco lineage to use for which species #100

Open muffato opened 9 months ago

muffato commented 9 months ago

Description of feature

We use Busco to assess the completeness & fragmentation of an assembly. The main parameter is a lineage name, that needs to be phylogenetically relevant to the species being tested. Our implementations are inconsistent:

We need to agree on one rule and use it throughout all pipelines.