Closed muffato closed 6 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 2349ff1
+| ✅ 132 tests passed |+
#| ❔ 20 tests were ignored |#
!| ❗ 1 tests had warnings |!
A single HiC sample is used to generate genome, so why would we want to generate two HiC maps for separate samples. I do not understand the biological use case.
A single HiC sample is used to generate genome, so why would we want to generate two HiC maps for separate samples. I do not understand the biological use case.
I think this comment should go to #103 ?
Just added the Crumble citation. I had missed it !
Fixes #87
In this pull-request I add support for Hi-C files being given as BAM. The pipeline will then skip the conversion CRAM→BAM.
Test with this samplesheet
I'm not changing the test profile yet because:
This may change in #103
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).