Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.
Currently, the statistics CSV file is generated from the first PacBio specimen and the first Hi-C specimen that reach its module. If there is more than one specimen, the other ones are computed/analysed but not included in the CSV.
Description of feature
Currently, the statistics CSV file is generated from the first PacBio specimen and the first Hi-C specimen that reach its module. If there is more than one specimen, the other ones are computed/analysed but not included in the CSV.