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sanger-tol / genomenote

This Nextflow DSL2 pipeline takes aligned HiC reads, creates contact maps and a table of statistics.
https://pipelines.tol.sanger.ac.uk/genomenote
MIT License
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Genome mappability #23

Open priyanka-surana opened 2 years ago

priyanka-surana commented 2 years ago

Description of feature

It is equal to percentage of reads mapped to the genome. Possible software: WGSIM

priyanka-surana commented 2 years ago

It is already calculated by GRIT. Where do we find this information?

muffato commented 2 years ago

GRIT typically record things in their Jira server. Double-check with Jo if they do it on the final assembly

priyanka-surana commented 1 year ago

https://github.com/eeaunin/gda/blob/main/feature_extraction/run_wgsim.py