search

sanger-tol / genomenote

Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.
https://pipelines.tol.sanger.ac.uk/genomenote
MIT License
24 stars 6 forks source link

Update bed_filter #47

Closed priyanka-surana closed 1 year ago

priyanka-surana commented 2 years ago

Description of the bug

The current version of the bed_filter.sh does not filter out truncated rows, so I want to add that functionality, with an additional pipe: | awk 'NF==11'

muffato commented 2 years ago

Why are some rows truncated in the first place ?