sanger-tol / genomenote

Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.
https://pipelines.tol.sanger.ac.uk/genomenote
MIT License
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Update `create_table` to deal with optional inputs #50

Closed priyanka-surana closed 1 year ago

priyanka-surana commented 2 years ago

Description of the bug

It is not possible to always run merquryfk for genome notes. Currently, this means that create_table is not run as well, as all inputs are required. The module needs update to accommodate optional inputs. Alternatively, the other results files can be published and processed separately.