Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.
It is not possible to always run merquryfk for genome notes. Currently, this means that create_table is not run as well, as all inputs are required. The module needs update to accommodate optional inputs. Alternatively, the other results files can be published and processed separately.
Description of the bug
It is not possible to always run
merquryfkfor genome notes. Currently, this means thatcreate_tableis not run as well, as all inputs are required. The module needs update to accommodate optional inputs. Alternatively, the other results files can be published and processed separately.