Get HiC Mapping result in summary table

sanger-tol / genomenote

Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is part of the Tree of Life production suite.

https://pipelines.tol.sanger.ac.uk/genomenote

MIT License

24 stars 6 forks source link

Get HiC Mapping result in summary table #53

Closed priyanka-surana closed 1 year ago

priyanka-surana commented 1 year ago

Description of feature

create_table should take hic.flagstat file and add the primary mapped statistic to the summary table.