Closed BethYates closed 8 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 48effa5
+| ✅ 130 tests passed |+
#| ❔ 20 tests were ignored |#
!| ❗ 1 tests had warnings |!
Follow up from some recent discussions with @muffato and @gq1: Would it be possible to use the same file name in both the
contact_maps
output folder as well as thedata_to_upload
folder. This is mostly if we decide to update certain entries in the future, it keeps things simple. Also makes sure the names are unique.
This seems sensible, the naming format I've used in the data_to_upload
folder is based on what was suggested by @muffato. Would you be happy with me renaming the file in contact_maps
to match this?
This seems sensible, the naming format I've used in the
data_to_upload
folder is based on what was suggested by @muffato. Would you be happy with me renaming the file incontact_maps
to match this?
From what I understand, you are planning to name the .mcool
, .cool
and .genome
files with the prefix $assembly
. I would recommend using $assembly_$hic
or something similar instead. This ensures that the prefix is always unique. And yes happy for you to rename the file in contact_maps
.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).