Closed BethYates closed 6 months ago
black
) is failingTo keep the code consistent with lots of contributors, we run automated code consistency checks. To fix this CI test, please run:
black
: pip install black
black .
Once you push these changes the test should pass, and you can hide this comment :+1:
We highly recommend setting up Black in your code editor so that this formatting is done automatically on save. Ask about it on Slack for help!
Thanks again for your contribution!
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 1d6bd23
+| ✅ 130 tests passed |+
#| ❔ 20 tests were ignored |#
!| ❗ 1 tests had warnings |!
Genome note template parameters that are expected to be filled in by this pipeline are written in upper case and surrounded in "{{ }}" for example "{{ GENOME_LENGTH }}" . Parameters that are not yet fetched by the pipeline are in red and in upper case and prefixed by a $.
Any parameter that is not found by the pipeline should be maintained in the output file in the same way that they appeared in the template file.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).