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sanger-tol
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readmapping
Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.
https://pipelines.tol.sanger.ac.uk/readmapping
MIT License
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Implement chunking to speed up alignment
#105
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reichan1998
closed
2 months ago
reichan1998
commented
3 months ago
Fixes #35 and #74
Add module SEQKIT_SPLIT2 to split FASTQ input
Add module SAMTOOLS_SPLIT to split CRAM input
Fixes #35 and #74