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sanger-tol / readmapping

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.
https://pipelines.tol.sanger.ac.uk/readmapping
MIT License
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Calculate mapped vs unmapped read percentages #119

Open tkchafin opened 1 month ago

tkchafin commented 1 month ago

Description of feature

We may not have to do anything if we can point MultiQC at the log files for bwa-mem and/or minimap

tkchafin commented 1 month ago

Also multiqc, as in https://github.com/sanger-tol/readmapping/issues/71