Embed the BAM headers from the insdcdownload pipeline

sanger-tol / readmapping

Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.

https://pipelines.tol.sanger.ac.uk/readmapping

MIT License

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Closed muffato closed 3 months ago

muffato commented 4 months ago

Add an extra pipeline parameter for a header file to be inserted in every BAM file generated by the pipeline.

In practice, we would use the header file generated by sanger-tol/insdcdownload#9