sanger-tol / treeval

Pipelines for the production of Treeval data
https://pipelines.tol.sanger.ac.uk/treeval
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Incorrect use of bwa-mem2 in GENERATE_CRAM_CSV #166

Closed DLBPointon closed 10 months ago

DLBPointon commented 10 months ago

Description of the bug

GENERATE_CRAM_CSV is requesting the version information for bwa-mem2. A tool not in use for that module. Although it causes no error for us, it is for some users.

This has been brought to our attention by @scorreard on sanger-tol/curationpretext

Command used and terminal output

No response

Relevant files

No response

System information

No response