Output .pretext files to hic_files.

[weaglesBio]

Description of the bug

The _hr.pretext and _normal.pretext files are being created, but not currently output to the /hic_files directory. This is due to the module creating them not being included in the list of modules whose outputs should be collected there in the modules.config.

Change: Add PRETEXT_GRAPH into

withName: 'REFORMAT_INTERSECT|SEQTK_CUTN|GAP_LENGTH|PRETEXT_INGEST_HIRES|PRETEXT_INGEST_SNDRD|COOLER_ZOOMIFY|COV_FOLDER|UCSC_BEDGRAPHTOBIGWIG|BED2BW_NORMAL|BED2BW_LOG2|EXTRACT_TELO|JUICER_TOOLS_PRE|SNAPSHOT_SRES|SNAPSHOT_HRES' {
        publishDir = [
            path: { "${params.outdir}/hic_files" },
            mode: params.publish_dir_mode,
            saveAs: { filename -> filename.equals('versions.yml') ? null : filename }
        ]

Command used and terminal output

No response

Relevant files

No response

System information

No response