Closed DLBPointon closed 9 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 5f8cb5b
+| ✅ 127 tests passed |+
#| ❔ 17 tests were ignored |#
!| ❗ 7 tests had warnings |!
I don't know if it has a functional difference but some of the ext.args assignments are wrapped in curly brackets and some are not. Should be updated to be consistent if possible.
I think there is to be a space between -P and the '.' in the FK change. -P takes an argument which is the location to save temp files to.
Thanks for the catch, all fixed and pipeline running. It was the {} in the modules.config that gave an error about being unable to parse the nextflow.config.
Now Erroring with bad substitution, will have a look.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).