Closed weaglesBio closed 7 months ago
As per Matthieu's message:
just updated genomeassembly to use larger machines on GitHub CI: https://github.com/sanger-tol/genomeassembly/pull/23/files#diff-b803fcb7f17ed9235f1e5cb1fcd2f5d3b2838429d4368ae4c57ce4436577f03fR25 Those machines are available for TreeVal too, and you could then get rid of https://github.com/sanger-tol/treeval/blob/dev/subworkflows/local/hic_mapping.nf#L173-L182 With some luck, all you need to do is to change the runs-on line highlighted above to one of these: ubuntu2204-4c 4-cores · 16 GB RAM · 150 GB SSD ubuntu2204-8c 8-cores · 32 GB RAM · 300 GB SSD ubuntu2204-16c 16-cores · 64 GB RAM · 600 GB SSD ubuntu2204-32c 32-cores · 128 GB RAM · 1200 GB SSD But that didn’t work for hifiasm under Docker. Guoying had to switch to Singularity instead (see the rest of that PR)
Optimizations done so far have eliminated the need for the paid runner.
A full test has, however, been implemented and works as off #195
Description of feature
As per Matthieu's message: