Closed weaglesBio closed 7 months ago
Isn't hic_bamtobed only filtering, not subsampling as thats the prior step?
//
// SUBWORKFLOW: BAM TO BED FOR JUICER - INCLUDES SUBSAMPLING
//
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 178c32a
+| ✅ 127 tests passed |+
#| ❔ 17 tests were ignored |#
!| ❗ 7 tests had warnings |!
Isn't hic_bamtobed only filtering, not subsampling as thats the prior step?
// // SUBWORKFLOW: BAM TO BED FOR JUICER - INCLUDES SUBSAMPLING //
I was just trying to indicate that this use of bam to bed, incorporated the subsampling step, to distinguish from the version used for cooler. I will reword to clarify.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors). Closes #158