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sanger-tol / treeval

Pipelines for the production of Treeval data
https://pipelines.tol.sanger.ac.uk/treeval
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Update resources for GET_PAIRED_CONTACT_BED #228

Closed weaglesBio closed 5 months ago

weaglesBio commented 5 months ago

Description of the bug

Scale base.config resources for GET_PAIRED_CONTACT_BED from hic files size.

Command used and terminal output

No response

Relevant files

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System information

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weaglesBio commented 5 months ago

required memory will be approx half size of input file (markup bam). cpu 6 (12 if markup .bam > 100GB leave time as default