Closed DLBPointon closed 5 months ago
Some modules escaped the 'great update'. Samtools, ucsc, windowmasker.
Mummer fix to add stageAs to both ref and query in order to avoid name conflicts.
The updates for pretext apparently reverted. So they have been re-applied in this PR.
PR -> galaxy due to conflicts in hic_opt
nf-core lint
Posted for pipeline commit c6c4ae0
+| ✅ 127 tests passed |+ #| ❔ 20 tests were ignored |# !| ❗ 4 tests had warnings |!
Some modules escaped the 'great update'. Samtools, ucsc, windowmasker.
Mummer fix to add stageAs to both ref and query in order to avoid name conflicts.
The updates for pretext apparently reverted. So they have been re-applied in this PR.
PR -> galaxy due to conflicts in hic_opt