MerquryFK - segmentation fault on large genomes

[weaglesBio]

Description of the bug

.command.sh: line 8: 41 Segmentation fault MerquryFK -P. -T16 iqMecThal1_T_fk.ktab ref.fa iqMecThal1_T On large genome (8.6G assembly)

Command used and terminal output

No response

Relevant files

No response

System information

No response

[yumisims]

please check the error rate of the assembly read, if it is too low (below q20), skip this process.

[yumisims]

In the future, a feature should be implemented to check if the assembly read type is hifi, then kmer/kmer_coverage process is included, otherwise, they should be skipped

[mcshane]

Note iqMecThal1 is from HiFi data

[yumisims]

nf-core merquery fastk hasn't been updated to the newest bug fixed version, need to use the internal one to make a patch for current module.

[yumisims]

fixed