Need to output .genome file for both sorted and unsorted runs. So need to add
|.*:.*:GENERATE_UNSORTED_GENOME:CUSTOM_GETCHROMSIZES
to treeval_upload publish directory
Also need to add:
withName: ".*:.*:READ_COVERAGE:BED2BW_AVG" { ext.prefix = { "${meta.id}_coverage_avg" } }
Description of the bug
Need to output .genome file for both sorted and unsorted runs. So need to add
|.*:.*:GENERATE_UNSORTED_GENOME:CUSTOM_GETCHROMSIZESto treeval_upload publish directoryAlso need to add:
withName: ".*:.*:READ_COVERAGE:BED2BW_AVG" { ext.prefix = { "${meta.id}_coverage_avg" } }Command used and terminal output
No response
Relevant files
No response
System information
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