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sanger-tol / treeval

Pipelines for the production of Treeval data
https://pipelines.tol.sanger.ac.uk/treeval
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Genomic data files are being out put as *null* #282

Closed DLBPointon closed 3 months ago

DLBPointon commented 3 months ago

Description of the bug

If multiple files from the same gene alignment set are being used then they may be overwriting each other.

bAnsAns1_1
bAnsAns1_1 AquilaChysaetos.bAquChr1_4_null.bigBed Mapping <--
bAnsAns1_1 bAnsAns1_1.bed.gz Mapping
bAnsAns1_1 bAnsAns1_1_buscogene.bigBed Busco
bAnsAns1_1 bAnsAns1_1_coverage_kmer.bigWig Mapping
bAnsAns1_1 bAnsAns1_1_coverage_log.bigWig Mapping
bAnsAns1_1 bAnsAns1_1_coverage_normal.bigWig Mapping
bAnsAns1_1 BSPQI.bigBed Insilico_Digest
bAnsAns1_1 BSSSI.bigBed Insilico_Digest
bAnsAns1_1 DLE1.bigBed Insilico_Digest
bAnsAns1_1 gap_bAnsAns1_1.bed.gz Mapping
bAnsAns1_1 pep_AquilaChysaetos.bAquChr1_4_pep.gff.gz Gene_Alignment
bAnsAns1_1 repden_bAnsAns1_1.bed.gz Mapping
bAnsAns1_1 TaeniopygiaGuttata.TaeGut3_2_4_null.bigBed Mapping <--
bAnsAns1_1 telo_bAnsAns1_1.bed.gz Mapping

Command used and terminal output

No response

Relevant files

No response

System information

No response