Closed DLBPointon closed 3 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 59bc432
+| ✅ 127 tests passed |+
#| ❔ 20 tests were ignored |#
!| ❗ 4 tests had warnings |!
Added the G back in, otherwise we get a segmentation fault at the samtools | pretext process We will have to keep this for now, but this very much needs investigation in the future. Some genomes will work with it, and others will fail due to the not a positive integer
error which has been reported by both me and Will.
I think I have figured out the bug, need to re-compile and re-generate the image, will update after GRC.
Also linked here: updating the module in nf-core for the fai file https://github.com/nf-core/modules/pull/5245
{name}_null.bed
files which over write files of other types (which are all null).