Script: samplesheet.py - Githubissues

sanger-tol / variantcalling

This Nextflow DSL2 pipeline calls variants on long read alignment. It is run after sanger-tol/readmapping in the Sanger ToL production suite but with options to run on unaligned reads.

https://pipelines.tol.sanger.ac.uk/variantcalling

MIT License

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Script: samplesheet.py #11

Closed priyanka-surana closed 2 years ago

priyanka-surana commented 2 years ago

Description of feature

Edit samplesheet to accommodate the different subworkflow inputs and meta information.

Illumina: Markdup CRAM, Unmasked genome FASTA
PacBio: Merged CRAM, Unmasked genome FASTA

Meta: Sample, datatype