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sanger-tol / variantcalling

This Nextflow DSL2 pipeline calls variants on long read alignment. It is run after sanger-tol/readmapping in the Sanger ToL production suite but with options to run on unaligned reads.
https://pipelines.tol.sanger.ac.uk/variantcalling
MIT License
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Module: Add GATK4 #19

Closed DLBPointon closed 1 year ago

DLBPointon commented 2 years ago

Description of feature

Addition of the GATK4 to create a Sequence dictionary