Add calculation for heterozygosity

sanger-tol / variantcalling

This Nextflow DSL2 pipeline calls variants on long read alignment. It is run after sanger-tol/readmapping in the Sanger ToL production suite but with options to run on unaligned reads.

https://pipelines.tol.sanger.ac.uk/variantcalling

MIT License

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Add calculation for heterozygosity #39

Closed priyanka-surana closed 10 months ago

priyanka-surana commented 1 year ago

Description of feature

Implement the following command either using the nf-core module.

vcftools --vcf $vcf --het --out $prefix

Variant file is input, it can be vcf, vcf.gz or bcf

This feature requested by Kamil Jaron and Alex Twyford

gq1 commented 10 months ago

https://github.com/sanger-tol/variantcalling/pull/62