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sanger-tol / variantcalling

This Nextflow DSL2 pipeline calls variants on long read alignment. It is run after sanger-tol/readmapping in the Sanger ToL production suite but with options to run on unaligned reads.
https://pipelines.tol.sanger.ac.uk/variantcalling
MIT License
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Optional readmapping subworkflow #45

Closed priyanka-surana closed 1 year ago

priyanka-surana commented 1 year ago

Description of feature

Create optional subworkflow to map PacBio reads before calling variants

priyanka-surana commented 1 year ago

https://github.com/sanger-tol/variantcalling/issues/48