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sanger-tol
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variantcalling
This Nextflow DSL2 pipeline calls variants on long read alignment. It is run after sanger-tol/readmapping in the Sanger ToL production suite but with options to run on unaligned reads.
https://pipelines.tol.sanger.ac.uk/variantcalling
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Add optional read mapping subworkflow
#48
Closed
priyanka-surana
closed
9 months ago
priyanka-surana
commented
1 year ago
Description of feature
Add read mapping flag
Import subworkflow to map PacBio reads
Description of feature