Closed gq1 closed 10 months ago
nf-core lint
overall result: Passed :white_check_mark: :warning:Posted for pipeline commit 8a7db40
+| ✅ 123 tests passed |+
#| ❔ 25 tests were ignored |#
!| ❗ 2 tests had warnings |!
@muffato I merged your PR but the Tower submission failed without any error. Probably the version number is wrong. https://github.com/sanger-tol/variantcalling/actions/runs/5865831388/job/15903577653
Because I can't see any log files for the action and that is why I keep the log files as well.
Because the workflow file name changed, they will be listed as a different workflow although the workflow name didn't change. https://github.com/sanger-tol/variantcalling/actions
We can't manually trigger the new workflow yet because they are not in the main branch.
Can you have a quick look and then I can merge to the dev
to see it works or not?
https://github.com/sanger-tol/variantcalling/actions/runs/5866300535/job/15904836219 no any error message here and no logs files generated as well.
Can you compare the yml files to https://github.com/nf-core/funcscan/blob/1.1.3/.github/workflows/awstest.yml and https://github.com/nf-core/funcscan/blob/1.1.3/.github/workflows/awsfulltest.yml, which was just released a few days ago ?
Can you compare the yml files to https://github.com/nf-core/funcscan/blob/1.1.3/.github/workflows/awstest.yml and https://github.com/nf-core/funcscan/blob/1.1.3/.github/workflows/awsfulltest.yml, which was just released a few days ago ?
Here is their finished job. We just don't have any error message. https://github.com/nf-core/funcscan/actions/runs/5832636289/job/15818453876
our old way still works: https://github.com/sanger-tol/variantcalling/actions/runs/5869294019/job/15913976977
@muffato I am going to merge this PR now and hope everything will work this time. Then we can apply to other repos as well.
Just need to delete the pipeline variable, which is not the full repo url.
We may add the upload artifacts step as well.
PR checklist
nf-core lint
).nextflow run . -profile test,docker --outdir <OUTDIR>
).docs/usage.md
is updated.docs/output.md
is updated.CHANGELOG.md
is updated.README.md
is updated (including new tool citations and authors/contributors).