Open muffato opened 6 months ago
In "Genomics Reveals Complex Population History and Unexpected Diversity of Eurasian Otters (Lutra lutra) in Britain Relative to Genetic Methods", du Plessis et al., 2023, 10.1093/molbev/msad207, the Cardfif team did population-genomics analyses on resequencing data of otter genomes (through ToL). The supplementary information contain a detailed listing (HTML) of the commands that were used to generate the analyses. Here is the PDF version: UK_bioinformatics_tobeshared.md.pdf.
10.1093/molbev/msad207
There will be other population-genomics analyses in ToL and we should add the analyses that can be systematically run to the pipeline.
Consider these existing Snakemake workflows:
In "Genomics Reveals Complex Population History and Unexpected Diversity of Eurasian Otters (Lutra lutra) in Britain Relative to Genetic Methods", du Plessis et al., 2023,
10.1093/molbev/msad207
, the Cardfif team did population-genomics analyses on resequencing data of otter genomes (through ToL). The supplementary information contain a detailed listing (HTML) of the commands that were used to generate the analyses. Here is the PDF version: UK_bioinformatics_tobeshared.md.pdf.There will be other population-genomics analyses in ToL and we should add the analyses that can be systematically run to the pipeline.
Task list