Add SAMTOOLS stats prior to GATK4

sanger-tol / variantcalling

This Nextflow DSL2 pipeline calls variants on long read alignment. It is run after sanger-tol/readmapping in the Sanger ToL production suite but with options to run on unaligned reads.

https://pipelines.tol.sanger.ac.uk/variantcalling

MIT License

3 stars 0 forks source link

Add SAMTOOLS stats prior to GATK4 #7

Closed DLBPointon closed 1 year ago

DLBPointon commented 2 years ago

Description of feature

SAMTOOLS stats should be added for summary statistics prior to the running of the pipeline.