Fix when multiple PacBio files are given

sanger-tol / variantcalling

This Nextflow DSL2 pipeline calls variants on long read alignment. It is run after sanger-tol/readmapping in the Sanger ToL production suite but with options to run on unaligned reads.

https://pipelines.tol.sanger.ac.uk/variantcalling

MIT License

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Fix when multiple PacBio files are given #77

Closed gq1 closed 1 month ago

gq1 commented 1 month ago

Description of the bug

The alignment subworkflow was imported from readmapping pipeline. Import changes from this bug fix PR https://github.com/sanger-tol/readmapping/pull/90 to here

Command used and terminal output

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Relevant files

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System information

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